BioChatter - Conversational AI for Biomedical Applications
biochatter is a Python package implementing a generic backend library for the connection of biomedical applications to conversational AI. We describe the framework in this preprint ; for a …
Basic Usage - Chat - BioChatter
BioChatter provides access to chat functionality via the Conversation class, which is implemented in several child classes (in the llm_connect.py module) to account for differences in APIs of the …
Open-source and Local LLMs - BioChatter
To support BioChatter applications in local and protected contexts, we provide API access via BioChatter classes in a unified way. Briefly, this module allows to connect to any open-source …
Developer Guide - BioChatter
We re-run the benchmark automatically if a test case has changed (reflected in a different md5 hash) or if there is a new biochatter version (potentially introducing changes in the behaviour …
Home - BioChatter
Here we describe the features of the BioChatter framework and their standard usage scenarios. For individual components, please check the side bar navigation.
Knowledge Graph RAG - BioChatter
This vignette demonstrates the KG module of BioChatter as used by the BioChatter Next application. We connect to a BioCypher knowledge graph (KG) to retrieve relevant information …
The Living Benchmark - BioChatter
The BioChatter Living Benchmark. For trustworthy application of LLMs to real-world and biomedical problems, it is imperative to understand their performance and limitations.
Overview - BioChatter
Aug 6, 2024 · Here we collect the results of the living BioChatter benchmark. For an explanation, see the benchmarking documentation and the developer docs for further reading. Scores per …
Retrieval-Augmented Generation - BioChatter
BioChatter provides access to biological databases through chat via the API Agent. It is designed to interact with various external APIs and provides a structured approach to generating …
Podcast my Paper - BioChatter
from biochatter.podcast import Podcaster from biochatter.vectorstore import DocumentReader # Load document reader = DocumentReader document = reader. load_document …